chromo

Introduction

  • Abstract
  • Code Overview
  • Monte Carlo Simulations

Theory

  • Polymer Models
  • Field Theoretic Treatment of Interactions

Tutorials

  • 1. Unconfined, Semiflexible Homopolymer
  • 2. Confined, Semiflexible Homopolymer
  • 3. Single-Mark Chromatin Simulation
  • 4. Two-Mark Chromatin Simulation
  • 5. Two-Mark Chromatin Simulation with Competitive Binding
  • 6. Simulation with Coarse and Refined Steps
  • 7. Kinked Chromatin Simulation
  • 8. Kinked Chromatin Simulation with Sterics
  • Code Snippets

Additional Resources

  • Modules
  • References
chromo
  • Docs »
  • Overview: module code

All modules for which code is available

  • chromo.beads
  • chromo.binders
  • chromo.fields
  • chromo.mc
    • chromo.mc.mc_controller
    • chromo.mc.mc_sim
    • chromo.mc.move_funcs
    • chromo.mc.moves
  • chromo.mixtures
  • chromo.polymers
  • chromo.util
    • chromo.util.bead_selection
    • chromo.util.gjk
    • chromo.util.linalg
    • chromo.util.mc_stat
    • chromo.util.poly_paths
    • chromo.util.poly_stat
    • chromo.util.reproducibility

© Copyright 2024, Joseph Wakim, Bruno Beltran, Andrew Spakowitz.

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