chromo

Introduction

  • Abstract
  • Code Overview
  • Monte Carlo Simulations

Theory

  • Polymer Models
  • Field Theoretic Treatment of Interactions

Tutorials

  • 1. Unconfined, Semiflexible Homopolymer
  • 2. Confined, Semiflexible Homopolymer
  • 3. Single-Mark Chromatin Simulation
  • 4. Two-Mark Chromatin Simulation
  • 5. Two-Mark Chromatin Simulation with Competitive Binding
  • 6. Simulation with Coarse and Refined Steps
  • 7. Kinked Chromatin Simulation
  • 8. Kinked Chromatin Simulation with Sterics
  • Code Snippets

Additional Resources

  • Modules
  • References
chromo
  • Docs »
  • Python Module Index

Python Module Index

c
 
c
- chromo
    chromo.beads
    chromo.binders
    chromo.fields
    chromo.mc
    chromo.mc.mc_controller
    chromo.mc.mc_sim
    chromo.mc.move_funcs
    chromo.mc.moves
    chromo.mixtures
    chromo.polymers
    chromo.util
    chromo.util.bead_selection
    chromo.util.gjk
    chromo.util.linalg
    chromo.util.mc_stat
    chromo.util.poly_paths
    chromo.util.poly_stat
    chromo.util.reproducibility

© Copyright 2024, Joseph Wakim, Bruno Beltran, Andrew Spakowitz.

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