chromo

Introduction

  • Abstract
  • Code Overview
  • Monte Carlo Simulations

Theory

  • Polymer Models
  • Field Theoretic Treatment of Interactions

Tutorials

  • 1. Unconfined, Semiflexible Homopolymer
  • 2. Confined, Semiflexible Homopolymer
  • 3. Single-Mark Chromatin Simulation
  • 4. Two-Mark Chromatin Simulation
  • 5. Two-Mark Chromatin Simulation with Competitive Binding
  • 6. Simulation with Coarse and Refined Steps
  • 7. Kinked Chromatin Simulation
  • 8. Kinked Chromatin Simulation with Sterics
  • Code Snippets

Additional Resources

  • Modules
  • References
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